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Former Opitz Group: Ecology of Bacterial Communities

The Opitz group goes extinct.
For ten years the Opitz group investigated how environmental changes affect bacterial interactions both on a microscopic and macroscopic level. We say thank you to all those supporting us during these years and showing interest in our research. Thank you!

Research of the Opitz Group (former Leisner):

bacterialBacterial competition

Bacterial communities represent complex and dynamic ecological systems. They appear in the form of free-floating bacteria as well as biofilms in nearly all parts of our environment, and are highly relevant for human health and disease. Spatial patterns arise from heterogeneities of the underlying 'landscape' or self-organized by the bacterial interactions, and play an important role in maintaining species diversity. Interactions comprise, amongst others, competition for resources and cooperation by sharing of extracellular polymeric substances. Another aspect of interactions is chemical warfare. Some bacterial strains produce toxins such as colicin, which acts as a poison to sensitive strains, while other strains are resistant. Stable coexistence of these strains arises when they can spatially segregate, resulting in self-organizing patterns.
In this research project, we want to employ the Escherichia coli Col E2 system, comprising a poison producing, a sensitive, and a resistant strain, to quantitatively study the emerging pattern formation. By a combination of experimental and theoretical methods (in collaboration with LS Frey, LMU), we aim at a characterization and quantification of the single cell interactions, as well as the influence of external heterogeneities and stochastic effects on the resulting patterns.

A. S. Weiß, A. Götz and M. Opitz
Dynamics of ColicinE2 production and release determine the competitive success of a toxin-producing population
Scientific Reports accepted (2020)

B. von Bronk, A. Götz and M. Opitz
Locality of interactions in three-strain bacterial competition in E. coli
Phys. Biol. 16 016002 (2019)

B. von Bronk, A. Götz and M. Opitz
Complex microbial systems across different levels of description
Phys. Biol. 15 051002 (2018)

von Bronk B, Schaffer SA, Götz A, Opitz M
Effects of stochasticity and division of labor in toxin production on two-strain bacterial competition in Escherichia coli.
PLOS Biology 15(5): e2001457. (2017)
- see highlight on LMU page: article
- see also highlight in Trends in Microbiology: article

Markus F. Weber, Gabriele Poxleitner, Elke Hebisch, Erwin Frey and Madeleine Opitz
Chemical warfare and survival strategies in bacterial range expansions
J.R.Soc. Interface 6 July 2014 vol. 11 no. 96 2014172

E. Hebisch, J. Knebel, J. Landsberg, E. Frey and M. Leisner
High variation of fluorescence protein maturation times in closely related Escherichia coli strains
PLOS ONE, 8(10): e75991 (2013)

heterogeneityHeterogeneity in Colicin expression

In a combined theoretical (LS Frey, LMU) and experimental approach we plan to study the heterogeneous gene expression of the Escherichia coli Colicin E2 operon in individual cells. Colicin E2 represents one class of toxins produced by bacterial cells to kill closely related bacteria, when environmental conditions become unfavorable. Using fluorescence time-lapse microscopy we aim to quantitatively analyze the kinetics of Colicin expression from the Colicin operon and investigate further factors such as small RNAs regulating Colicin release and its impact on the establishment of heterogeneity. In particular, we are interested in changes of expression dynamics in dependence of SOS response and how this affects the amount and time-point of Colicin release.

 A. Goetz, A. Mader, B. v. Bronk, A. S. Weiss, M. Opitz
Gene expression noise in a complex artificial toxin expression system
Plos One (2020)

Goetz A., Lechner M., Mader A., von Bronk B., Frey E., and Opitz M.
CsrA and its regulators control the time-point of ColicinE2 release in Escherichia coli,
 Scientific Reports 8, (2018)

Lechner M., Schwarz M., Opitz M., and Frey E.
Hierarchical Post-transcriptional Regulation of Colicin E2 Expression in Escherichia Coli,
 PLoS computational biology 12 (12), e1005243 (2016).

Mader A., von Bronk B., Ewald B., Kesel S., Schnetz K., Frey E., Opitz M.
Amount of colicin release in Escherichia coli is regulated by lysis gene expression of the Colicin E2 operon
PLoS ONE 10(3): e0119124. doi:10.1371/journal.pone.0119124 (get article)

This project is part of the SPP1617 

BiofilmEPSMechanics of Bacterial Biofilms

Bacteria embed themselves with secreted biopolymers (EPS) forming a community that is referred to as a biofilm. Due to their high mechanical resilience and their resistance to antibiotic treatment, such biofilms constitute a significant problem both in industry and health care. However, the molecular reason for this outstanding sturdiness of bacterial biofilms is not understood. In this project, we aim at analysing the mechanical resistance of bacterial biofilms towards externally applied forces (e.g. shear forces) both for developing (early stages of biofilm formation) and mature biofilms. As a model system, we will study biofilms formed by the organism Bacillus subtilis, a non-pathogenic bacterium that mainly resides in soil but has also been suggested to be a commensal resident of the human gut. We will investigate different wild-type strains of Bacillus subtilis that differ in the expression profile of exopolymeric substances of their biofilm matrix, as these EPS are thought to directly affect the mechanical properties of the biofilm. Using a combination of different experimental techniques, we aim at bridging the gap between the biomolecular level and the macroscopic behavior such as the biomechanical properties and the formation dynamics of bacterial biofilms.

This project is performed in collaboration with Prof. Lieleg (EMITUM) and Prof. Seeberger (MPI Potzdam).

M. Klotz, M. Kretschmer, A. Goetz, S. Ezendam, O. Lieleg, M. Opitz
Importance of the biofilm matrix for the erosion stability of Bacillus subtilis NCIB 3610 biofilms
RCS Advances (2019)

C. Falcón García, F. Stangl, A. Götz, W. Zhao, S.A. Sieber, M. Opitz, O. Lieleg
Topographical alterations render bacterial biofilms susceptible to chemical and mechanical stress
Biomater. Sci. (2019)

S. Kesel, B. v. Bronk, C. Falcon-Garcia, A. Goetz, O. Lieleg and M. Opitz
Matrix compostition determines dimensions of Bacillus subtilis NCIB 3610 biofilm colonies grown on LB agar
RSC advances, (2017)

M. Werb, C. Falcon-Garcia, N. C. Bach, S. Grumbein, S. A. Sieber, M. Opitz and O. Lieleg
Surface topology affects wetting behavior of Bacillus subtilis biofilms
npj Biofilms and Microbioms, (2017) doi:10.1038/s41522-017-0018-1

M. Tallawi, M. Opitz and O. Lieleg
Modulation of the mechanical properties of bacterial biofilms in response to environmental challenges
Biomaterials Science, DOI: 10.1039/C6BM00832A (2017)

S. Grumbein,M. Werb, M. Opitz and O. Lieleg
Elongational rheology of bacterial biofilms in situ
Journal of Rheology,60:1085-1094 (2016)

S. Kesel, S. Grumbein, I. Gümperlein, M. Tallawi, A-K. Marel, O. Lieleg and M. Opitz
Direct comparison of physical properties of Bacillus subtilis NCIB 3610 and B-1 biofilms
Applied and Enviromental Microbiology, 82(8):2424-2432 (2016)

S. Kesel, F. Moormann, I. Gümperlein, A. Mader, M. Morikawa, O. Lieleg and M. Opitz
Genome sequence of the biofilm producing Bacillus subtilis strain B-1 isolated from an oil field.
Genome Announcements, 2(6):e01163-14 (2014)

S. Kesel, A. Mader, P.H. Seeberger, O. Lieleg and M. Opitz
Carbohydrate-coating reduces adhesion of biofilm forming Bacillus subtilis to gold surfaces
Applied and Enviromental Microbiology Published ahead of print 18 July 2014, doi:10.1128/AEM.01600-14 (article)

S. Grumbein, M. Opitz and O. Lieleg
Selected metal ions protect Bacillus subtilis biofilms from erosion
Metallomics, 2014, Advance Article, DOI: 10.1039/C4MT00049H (article)

toc_ecolisCantilever array biosensors

Biosensor research is a highly interdisciplinary field, as biosensor applications are needed in life sciences, health care and medical diagnostics as well as environmental screening. As such, a variety of biosensors have been developed for the detection of different molecules. In the past years, improvements in biosensor research comprised high selectivity, reduced detection volumes and increased parallelization. Cantilever-based biosensors represent one class of biosensors and have been used to study DNA or protein interactions, but also allow the analysis of eukaryotic or prokaryotic growth even able to weigh single bacterial cells. The advantage of this technique is the possibility of analysing of up to 8 samples in parallel in real-time without the need of additional labelling. Cantilever can hereby be coated with different sensing layers depending on the analyte studied, a process named functionalization.
Carbohydrates (glycans) are one class of biosensing molecules. Carbohydrate-protein interactions are thereby important for cell adhesion, signal transduction or virus infection. Glycan cantilever array sensors were shown to detect specific carbohydrate-protein interactions with pico-molar sensitivity. Recently, we were able to detect and discriminate different Escherichia coli strains using this method. In the next steps, we want to analyse the suitability of this method as a reliable sensing tool for medical diagnostics. This project is performed in collaboration with Prof. Seeberger and Dr. Hartmann (MPI Berlin).

A. Mader, K. Gruber, R. Castelli, B. Hermann, P.H.Seeberger, J. Raedler and M. Leisner Discrimination of Escherichia coli strains using Glycan Cantilever Array Sensors NanoLetters, Publication Date (Web): December 5, 2011 (Letter), DOI: 10.1021/nl203736u (get article)

Kathrin Gruber, Tim Horlacher, Riccardo Castelli, Andreas Mader, Peter H. Seeberger, and Bianca A. Hermann
Cantilever Array Sensors Detect Specific Carbohydrate−Protein Interactions with Picomolar Sensitivity
ACS Nano, pp 3670–3678, 5, 2011 (get article)